Demos#
The three model demos are existing scientific notebooks with portability and correctness fixes. The fourth notebook is a lightweight executable OMIM TraitGym workflow for joining variants to public GPN-Star scores and computing global AUPRC; it does not download a model or MSA.
Tokenization, embeddings, masked nucleotide probabilities, and plots for the published Brassicales checkpoint.
Rate parameters, nucleotide probabilities, and a zero-shot substitution score.
Alignment-aware logits, raw LLRs, and mutation-rate calibration using the tiny published fixture.
Join the OMIM TraitGym variants to immutable, chromosome-sharded genome-wide scores and compute global AUPRC without downloading a model or whole-genome alignment.
Read the committed code and plots here without a kernel. Deliberate output refreshes use the pinned Python 3.13 environment and guarded process documented in Development.